Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs997921 chr17:80781113 G/A 2.89E-9 281 26.07 25.6 16.4 KM Plot
LAML rs10013273 chr4:4721965 T/C 1.81E-6 111 4.1 20.77 12.65 KM Plot
LAML rs1010539 chr7:135635067 C/T 0.000102 109 13.1 28.47 0 KM Plot
LAML rs10162002 chr13:24042510 G/A 1.26E-7 110 13.2 21.78 1 KM Plot
LAML rs10168372 chr2:11832163 C/T 5.51E-7 108 16.27 13.15 1.03 KM Plot
LAML rs10188046 chr2:3221729 C/G 6.63E-5 110 0 14.7 15.23 KM Plot
LAML rs10192693 chr2:3221825 A/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs10195106 chr2:242367402 C/T 6.66E-5 110 1.53 14.63 16.77 KM Plot
LAML rs10195591 chr2:3221751 T/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs10196027 chr2:240548419 T/C 0.000174 106 13.2 33.47 0 KM Plot
LAML rs10200437 chr2:3218348 T/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs10201980 chr2:39204820 C/T 0.000139 111 16.23 6.03 0 KM Plot
LAML rs10202289 chr2:109447064 T/A 0.000142 108 0 19.33 13.1 KM Plot
LAML rs10205558 chr2:242436527 T/G 8.12E-5 109 1.53 14.63 17.23 KM Plot
LAML rs10260642 chr7:94224868 C/T 0.000156 111 0 10.2 16.17 KM Plot